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Table 2 Copy number variation events larger than 10 kb

From: Assessment of genome integrity with array CGH in cattle transgenic cell lines produced by homologous recombination and somatic cell cloning

No

Type

Chr

Start

End

Length

Log R

Shared

1

Self1

chr13

48,998,999

49,016,999

18,000

0.5168

Yes

  

chr3

1,020,294

1,039,699

19,405

0.6721

Yes

  

chr4

41,465,452

41,496,569

31,117

0.6946

Yes

2

High1

chr13

48,992,999

49,010,999

18,000

0.6269

Yes

  

chr3

1,020,294

1,039,699

19,405

0.6410

Yes

  

chr4

33,570,495

33,584,300

13,805

0.5216

Yes

  

chr4

41,465,452

41,496,569

31,117

0.5674

Yes

3

Low1

chr13

48,991,360

49,017,997

26,637

0.6818

Yes

  

chr29

19,400,430

19,449,274

48,844

0.5343

Yes

  

chr3

1,020,294

1,042,839

22,545

0.7566

Yes

  

chr4

41,465,452

41,496,569

31,117

0.8130

Yes

4

Self2

chr13

48,991,360

49,017,997

26,637

0.5172

Yes

  

chr3

1,020,294

1,042,839

22,545

0.6039

Yes

  

chr4

41,465,452

41,496,569

31,117

0.5761

Yes

5

High2

chr25

32,373,045

32,464,814

91,769

0.6769

Yes

6

Low2

chr11

87,532,580

87,543,090

10,510

-0.5617

No

  

chr2

16,958,057

16,968,620

10,563

-0.5814

No

  

chr25

32,374,157

32,471,634

97,477

-0.8136

Yes

  

chr29

43,204,051

43,223,301

19,250

-0.5334

No

  

chrX

10,447,331

10,457,486

10,155

-0.9137

No

7

Self3

chr1

5,249,999

5,285,999

36,000

0.5481

Yes

  

chr10

59,478,526

59,531,204

52,678

0.5501

No

  

chr13

48,991,360

49,017,997

26,637

0.6809

Yes

  

chr15

26,576,999

26,602,199

25,200

0.6474

Yes

  

chr2

39,223,655

39,235,168

11,513

-0.5661

No

  

chr25

32,374,157

32,471,634

97,477

-0.6113

Yes

  

chr29

19,399,250

19,449,274

50,024

0.6094

Yes

  

chr3

1,020,294

1,039,699

19,405

0.8678

Yes

  

chr4

27,707,990

27,750,008

42,018

0.5614

No

  

chr4

41,465,452

41,496,569

31,117

0.8426

Yes

  

chr6

45,738,703

45,776,348

37,645

0.5049

Yes

  

chr6

89,209,799

89,220,599

10,800

0.6477

Yes

  

chr8

36,073,799

36,145,799

72,000

0.5122

Yes

  

chrX

37,290,568

37,303,155

12,587

0.8150

No

  

chrX

37,564,199

37,614,599

50,400

0.5427

No

  

chrX

56,120,456

56,149,298

28,842

0.6124

No

  

chrX

84,230,177

84,255,543

25,366

0.5679

No

  

chrX

138,374,999

138,386,999

12,000

0.5528

No

8

High3

chr13

48,993,325

49,013,328

20,003

0.5149

Yes

  

chr15

26,576,999

26,602,199

25,200

0.6022

Yes

  

chr25

32,374,157

32,403,637

29,480

-0.8278

Yes

  

chr4

33,564,599

33,578,999

14,400

0.5363

Yes

  

chr4

41,466,599

41,495,399

28,800

0.5097

Yes

  

chr6

45,744,065

45,772,999

28,934

0.5284

Yes

9

Low3

chr1

5,249,999

5,285,999

36,000

0.5559

Yes

  

chr1

144,107,850

144,130,905

23,055

0.5949

No

  

chr13

48,991,360

49,017,997

26,637

0.6031

Yes

  

chr17

73,139,605

73,159,081

19,476

-2.0603

No

  

chr18

6,080,815

6,121,152

40,337

-0.5749

No

  

chr25

32,362,844

32,470,747

107,903

0.6669

Yes

  

chr29

19,412,812

19,444,215

31,403

0.6690

Yes

  

chr3

1,020,599

1,038,599

18,000

0.6787

Yes

  

chr4

33,564,599

33,578,999

14,400

0.6100

Yes

  

chr4

41,465,452

41,487,890

22,438

0.6229

Yes

  

chr6

89,208,198

89,218,288

10,090

0.6937

Yes

  

chr8

36,077,399

36,152,999

75,600

0.5089

Yes

  

chrU

12,620,478

12,665,758

45,280

0.7441

No

10

Self4

chr13

48,992,999

49,010,999

18,000

0.5729

Yes

  1. Chr: chromosome, Log R: log2Ratio, Shared: Yes/No - events shared among samples (i.e. hybridizations) or not.